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I am trying to index a reference genome on a pipeline with snakemake and I made this rule: rule ref… Read more Star Index Issues To The Step 4

I'm trying to first generate 4 files, for the LETTERS x NUMS combinations, then summarize over … Read more How To Do A Partial Expand In Snakemake?

I'm building an SQL script out of text data. The (part of) script shall consist of a CREATE TAB… Read more How To Make Snakemake Input Optional But Not Empty?

I'm a newbie using Snakemake and not an expert in Python neither so the answer might be quite o… Read more Snakemake - Problem Trying To Use Global_wildcards (typeerror: Expected Str, Got List)

Let's suppose that I have the following files, on which I want to apply some processing automat… Read more How To Use Expand In Snakemake When Some Particular Combinations Of Wildcards Are Not Desired?